IL_7NHK_131

3D structure

PDB id

7NHK (explore in PDB, NAKB, or RNA 3D Hub)

Description

LsaA, an antibiotic resistance ABCF, in complex with 70S ribosome from Enterococcus faecalis

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UUC*GA

Length

5 nucleotides

Bulged bases

7NHK|1|a|U|394

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7NHK_131 not in the Motif Atlas

Homologous match to IL_4LFB_014

Geometric discrepancy: 0.1256

The information below is about IL_4LFB_014

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_97561.6

Basepair signature

cWW-L-cWW

Number of instances in this motif group

170

Unit IDs

7NHK|1|a|U|393
7NHK|1|a|U|394
7NHK|1|a|C|395
*
7NHK|1|a|G|418
7NHK|1|a|A|419

Current chains

Chain a

16S rRNA

Nearby chains

Chain q

30S ribosomal protein S16