IL_7NHK_134

3D structure

PDB id

7NHK (explore in PDB, NAKB, or RNA 3D Hub)

Description

LsaA, an antibiotic resistance ABCF, in complex with 70S ribosome from Enterococcus faecalis

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UGAAGAAG*CGUAAAA

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7NHK_134 not in the Motif Atlas

Homologous match to IL_4LFB_017

Geometric discrepancy: 0.1545

The information below is about IL_4LFB_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_62329.1

Basepair signature

cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW

Number of instances in this motif group

2

Unit IDs

7NHK|1|a|U|435
7NHK|1|a|G|436
7NHK|1|a|A|437
7NHK|1|a|A|438
7NHK|1|a|G|439
7NHK|1|a|A|440
7NHK|1|a|A|441
7NHK|1|a|G|442
*
7NHK|1|a|C|453
7NHK|1|a|G|454
7NHK|1|a|U|455
7NHK|1|a|A|456
7NHK|1|a|A|457
7NHK|1|a|A|458
7NHK|1|a|A|459

Current chains

Chain a

16S rRNA

Nearby chains

Chain e

30S ribosomal protein S4