IL_7NHK_139

3D structure

PDB id

7NHK (explore in PDB, NAKB, or RNA 3D Hub)

Description

LsaA, an antibiotic resistance ABCF, in complex with 70S ribosome from Enterococcus faecalis

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CGUAAAG*CG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7NHK_139 not in the Motif Atlas

Homologous match to IL_5J7L_026

Geometric discrepancy: 0.1405

The information below is about IL_5J7L_026

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_38186.6

Basepair signature

cWW-L-cWW-L-L-R

Number of instances in this motif group

4

Unit IDs

7NHK|1|a|C|595
7NHK|1|a|G|596
7NHK|1|a|U|597
7NHK|1|a|A|598
7NHK|1|a|A|599
7NHK|1|a|A|600
7NHK|1|a|G|601
*
7NHK|1|a|C|907
7NHK|1|a|G|908

Current chains

Chain a

16S rRNA

Nearby chains

Chain m

30S ribosomal protein S12

Chain r

30S ribosomal protein S17