IL_7NHL_001

3D structure

PDB id

7NHL (explore in PDB, NAKB, or RNA 3D Hub)

Description

VgaA-LC, an antibiotic resistance ABCF, in complex with 70S ribosome from Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GUGGAUG*CUGAAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7NHL_001 not in the Motif Atlas

Geometric match to IL_4WF9_001

Geometric discrepancy: 0.0828

The information below is about IL_4WF9_001

Detailed Annotation

Triple sheared with non-canonical cWW

Broad Annotation

Triple sheared

Motif group

IL_22311.2

Basepair signature

cWW-cWW-tSH-tHS-tHS-L-R-cWW

Number of instances in this motif group

11

Unit IDs

7NHL|1|A|G|24
7NHL|1|A|U|25
7NHL|1|A|G|26
7NHL|1|A|G|27
7NHL|1|A|A|28
7NHL|1|A|U|29
7NHL|1|A|G|30
*
7NHL|1|A|C|555
7NHL|1|A|U|556
7NHL|1|A|G|557
7NHL|1|A|A|558
7NHL|1|A|A|559
7NHL|1|A|A|560
7NHL|1|A|C|561

Current chains

Chain A

23S rRNA

Nearby chains

Chain 5

50S ribosomal protein L32

Chain T

50S ribosomal protein L20

Chain V

50S ribosomal protein L22