IL_7NHL_050

3D structure

PDB id

7NHL (explore in PDB, NAKB, or RNA 3D Hub)

Description

VgaA-LC, an antibiotic resistance ABCF, in complex with 70S ribosome from Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GGAAG*CGC

Length

8 nucleotides

Bulged bases

7NHL|1|A|G|1369

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7NHL_050 not in the Motif Atlas

Homologous match to IL_4WF9_050

Geometric discrepancy: 0.1205

The information below is about IL_4WF9_050

Detailed Annotation

Major groove minor groove platform with tHH

Broad Annotation

No text annotation

Motif group

IL_06671.2

Basepair signature

cWW-L-cWW-L-L

Number of instances in this motif group

11

Unit IDs

7NHL|1|A|G|1356
7NHL|1|A|G|1357
7NHL|1|A|A|1358
7NHL|1|A|A|1359
7NHL|1|A|G|1360
*
7NHL|1|A|C|1368
7NHL|1|A|G|1369
7NHL|1|A|C|1370

Current chains

Chain A

23S rRNA

Nearby chains

Chain V

50S ribosomal protein L22