IL_7NHL_065

3D structure

PDB id

7NHL (explore in PDB, NAKB, or RNA 3D Hub)

Description

VgaA-LC, an antibiotic resistance ABCF, in complex with 70S ribosome from Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CGUAAC*GGAGAAG

Length

13 nucleotides

Bulged bases

7NHL|1|A|G|1743

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7NHL_065 not in the Motif Atlas

Geometric match to IL_7RQB_068

Geometric discrepancy: 0.1063

The information below is about IL_7RQB_068

Detailed Annotation

tSH-tSH-tHH-tHS

Broad Annotation

No text annotation

Motif group

IL_65969.2

Basepair signature

cWW-tSH-tSH-tHH-tHS-cWW

Number of instances in this motif group

8

Unit IDs

7NHL|1|A|C|1730
7NHL|1|A|G|1731
7NHL|1|A|U|1732
7NHL|1|A|A|1733
7NHL|1|A|A|1734
7NHL|1|A|C|1735
*
7NHL|1|A|G|1740
7NHL|1|A|G|1741
7NHL|1|A|A|1742
7NHL|1|A|G|1743
7NHL|1|A|A|1744
7NHL|1|A|A|1745
7NHL|1|A|G|1746

Current chains

Chain A

23S rRNA

Nearby chains

Chain G

50S ribosomal protein L2

Chain a

Small subunit ribosomal RNA; SSU rRNA