IL_7NHL_068

3D structure

PDB id

7NHL (explore in PDB, NAKB, or RNA 3D Hub)

Description

VgaA-LC, an antibiotic resistance ABCF, in complex with 70S ribosome from Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UGCUAAA*UGAUGUAUA

Length

16 nucleotides

Bulged bases

7NHL|1|A|U|1828, 7NHL|1|A|U|1843, 7NHL|1|A|U|1847

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7NHL_068 not in the Motif Atlas

Homologous match to IL_7RQB_070

Geometric discrepancy: 0.1018

The information below is about IL_7RQB_070

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_17069.3

Basepair signature

cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

Number of instances in this motif group

5

Unit IDs

7NHL|1|A|U|1825
7NHL|1|A|G|1826
7NHL|1|A|C|1827
7NHL|1|A|U|1828
7NHL|1|A|A|1829
7NHL|1|A|A|1830
7NHL|1|A|A|1831
*
7NHL|1|A|U|1840
7NHL|1|A|G|1841
7NHL|1|A|A|1842
7NHL|1|A|U|1843
7NHL|1|A|G|1844
7NHL|1|A|U|1845
7NHL|1|A|A|1846
7NHL|1|A|U|1847
7NHL|1|A|A|1848

Current chains

Chain A

23S rRNA

Nearby chains

Chain G

50S ribosomal protein L2

Chain a

Small subunit ribosomal RNA; SSU rRNA