IL_7NHL_078

3D structure

PDB id

7NHL (explore in PDB, NAKB, or RNA 3D Hub)

Description

VgaA-LC, an antibiotic resistance ABCF, in complex with 70S ribosome from Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

ACG*CUAU

Length

7 nucleotides

Bulged bases

7NHL|1|A|C|2082, 7NHL|1|A|U|2640

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7NHL_078 not in the Motif Atlas

Geometric match to IL_5TBW_092

Geometric discrepancy: 0.383

The information below is about IL_5TBW_092

Detailed Annotation

Major groove platform with intercalation

Broad Annotation

Major groove platform

Motif group

IL_54678.7

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

5

Unit IDs

7NHL|1|A|A|2081
7NHL|1|A|C|2082
7NHL|1|A|G|2083
*
7NHL|1|A|C|2639
7NHL|1|A|U|2640
7NHL|1|A|A|2641
7NHL|1|A|U|2642

Current chains

Chain A

23S rRNA

Nearby chains

Chain 5

50S ribosomal protein L32

Chain H

50S ribosomal protein L3

Chain V

50S ribosomal protein L22