IL_7NHL_088

3D structure

PDB id

7NHL (explore in PDB, NAKB, or RNA 3D Hub)

Description

VgaA-LC, an antibiotic resistance ABCF, in complex with 70S ribosome from Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UGAG*CUUA

Length

8 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7NHL_088 not in the Motif Atlas

Geometric match to IL_3NDB_001

Geometric discrepancy: 0.3473

The information below is about IL_3NDB_001

Detailed Annotation

Self complementary

Broad Annotation

Self complementary

Motif group

IL_30621.4

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

66

Unit IDs

7NHL|1|A|U|2166
7NHL|1|A|G|2167
7NHL|1|A|A|2168
7NHL|1|A|G|2169
*
7NHL|1|A|C|2176
7NHL|1|A|U|2177
7NHL|1|A|U|2178
7NHL|1|A|A|2179

Current chains

Chain A

23S rRNA

Nearby chains

Chain l

30S ribosomal protein S11