IL_7NHL_156

3D structure

PDB id

7NHL (explore in PDB, NAKB, or RNA 3D Hub)

Description

VgaA-LC, an antibiotic resistance ABCF, in complex with 70S ribosome from Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GGG*UU

Length

5 nucleotides

Bulged bases

7NHL|1|a|G|936

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7NHL_156 not in the Motif Atlas

Homologous match to IL_4LFB_036

Geometric discrepancy: 0.1332

The information below is about IL_4LFB_036

Detailed Annotation

Single bulged G

Broad Annotation

No text annotation

Motif group

IL_28408.3

Basepair signature

cWW-L-cWW

Number of instances in this motif group

76

Unit IDs

7NHL|1|a|G|935
7NHL|1|a|G|936
7NHL|1|a|G|937
*
7NHL|1|a|U|1401
7NHL|1|a|U|1402

Current chains

Chain a

16S rRNA

Nearby chains

Chain b

RNA (5'-R(P*GP*GP*AP*GP*GP*UP*AP*UP*G)-3')

Chain f

30S ribosomal protein S5