IL_7NHL_189

3D structure

PDB id

7NHL (explore in PDB, NAKB, or RNA 3D Hub)

Description

VgaA-LC, an antibiotic resistance ABCF, in complex with 70S ribosome from Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UUAAG*CGAAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7NHL_189 not in the Motif Atlas

Homologous match to IL_9DFE_074

Geometric discrepancy: 0.1797

The information below is about IL_9DFE_074

Detailed Annotation

UAA/GAN with extra stack

Broad Annotation

UAA/GAN with extra stack

Motif group

IL_89021.4

Basepair signature

cWW-L-R-L-R-tHS-cWW

Number of instances in this motif group

8

Unit IDs

7NHL|1|A|U|1878
7NHL|1|A|U|1879
7NHL|1|A|A|1880
7NHL|1|A|A|1881
7NHL|1|A|G|1882
*
7NHL|1|A|C|1914
7NHL|1|A|G|1915
7NHL|1|A|A|1916
7NHL|1|A|A|1917
7NHL|1|A|G|1918

Current chains

Chain A

23S rRNA

Nearby chains

Chain 0

Lincosamide-streptogramin A resistance protein