IL_7NHM_006

3D structure

PDB id

7NHM (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome from Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CC*GAG

Length

5 nucleotides

Bulged bases (A, C, G, U)

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7NHM_006 not in the Motif Atlas

Homologous match to IL_7A0S_005

Geometric discrepancy: 0.1486

The information below is about IL_7A0S_005

Detailed Annotation

Single stack bend

Broad Annotation

No text annotation

Motif group

IL_76488.5

Basepair signature

cWW-L-cWW

Number of instances in this motif group

36

Unit IDs

7NHM|1|A|C|186
7NHM|1|A|C|187
*
7NHM|1|A|G|215
7NHM|1|A|A|216
7NHM|1|A|G|217

Current chains

Chain A

23S rRNA

Nearby chains

Chain 7

50S ribosomal protein L34