IL_7NHM_014

3D structure

PDB id

7NHM (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome from Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

AGAG*UGAU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7NHM_014 not in the Motif Atlas

Homologous match to IL_4WF9_016

Geometric discrepancy: 0.1216

The information below is about IL_4WF9_016

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.15

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

34

Unit IDs

7NHM|1|A|A|581
7NHM|1|A|G|582
7NHM|1|A|A|583
7NHM|1|A|G|584
*
7NHM|1|A|U|597
7NHM|1|A|G|598
7NHM|1|A|A|599
7NHM|1|A|U|600

Current chains

Chain A

23S rRNA

Nearby chains

Chain M

50S ribosomal protein L13

Chain T

50S ribosomal protein L20

Chain U

50S ribosomal protein L21