IL_7NHM_020

3D structure

PDB id

7NHM (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome from Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UC*GAA

Length

5 nucleotides

Bulged bases

7NHM|1|A|A|809

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7NHM_020 not in the Motif Atlas

Geometric match to IL_4V9F_025

Geometric discrepancy: 0.0957

The information below is about IL_4V9F_025

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.5

Basepair signature

cWW-L-cWW

Number of instances in this motif group

129

Unit IDs

7NHM|1|A|U|742
7NHM|1|A|C|743
*
7NHM|1|A|G|808
7NHM|1|A|A|809
7NHM|1|A|A|810

Current chains

Chain A

23S rRNA

Nearby chains

Chain G

50S ribosomal protein L2