IL_7NHM_050

3D structure

PDB id

7NHM (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome from Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GGAAG*CGC

Length

8 nucleotides

Bulged bases

7NHM|1|A|G|1369

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7NHM_050 not in the Motif Atlas

Homologous match to IL_4WF9_050

Geometric discrepancy: 0.1191

The information below is about IL_4WF9_050

Detailed Annotation

Major groove minor groove platform with tHH

Broad Annotation

No text annotation

Motif group

IL_83150.2

Basepair signature

cWW-tHH-cWW-L-L

Number of instances in this motif group

4

Unit IDs

7NHM|1|A|G|1356
7NHM|1|A|G|1357
7NHM|1|A|A|1358
7NHM|1|A|A|1359
7NHM|1|A|G|1360
*
7NHM|1|A|C|1368
7NHM|1|A|G|1369
7NHM|1|A|C|1370

Current chains

Chain A

23S rRNA

Nearby chains

Chain V

50S ribosomal protein L22

Chain W

50S ribosomal protein L23