IL_7NHM_051

3D structure

PDB id

7NHM (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome from Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CUAAG*CGAUG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7NHM_051 not in the Motif Atlas

Homologous match to IL_7A0S_048

Geometric discrepancy: 0.1187

The information below is about IL_7A0S_048

Detailed Annotation

UAA/GAN

Broad Annotation

UAA/GAN

Motif group

IL_89021.2

Basepair signature

cWW-L-R-L-R-tHS-cWW

Number of instances in this motif group

6

Unit IDs

7NHM|1|A|C|1388
7NHM|1|A|U|1389
7NHM|1|A|A|1390
7NHM|1|A|A|1391
7NHM|1|A|G|1392
*
7NHM|1|A|C|1413
7NHM|1|A|G|1414
7NHM|1|A|A|1415
7NHM|1|A|U|1416
7NHM|1|A|G|1417

Current chains

Chain A

23S rRNA

Nearby chains

Chain 7

50S ribosomal protein L34

Chain G

50S ribosomal protein L2