IL_7NHM_052

3D structure

PDB id

7NHM (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome from Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UGAGG*CGUAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7NHM_052 not in the Motif Atlas

Homologous match to IL_5J7L_293

Geometric discrepancy: 0.1322

The information below is about IL_5J7L_293

Detailed Annotation

tSH-tHW-tHS

Broad Annotation

No text annotation

Motif group

IL_17136.7

Basepair signature

cWW-tSH-tHW-tHS-cWW

Number of instances in this motif group

14

Unit IDs

7NHM|1|A|U|1394
7NHM|1|A|G|1395
7NHM|1|A|A|1396
7NHM|1|A|G|1397
7NHM|1|A|G|1398
*
7NHM|1|A|C|1407
7NHM|1|A|G|1408
7NHM|1|A|U|1409
7NHM|1|A|A|1410
7NHM|1|A|G|1411

Current chains

Chain A

23S rRNA

Nearby chains

Chain 1

50S ribosomal protein L28

Chain 7

50S ribosomal protein L34

Chain G

50S ribosomal protein L2