IL_7NHM_066

3D structure

PDB id

7NHM (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome from Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CGUAAC*GGAGAAG

Length

13 nucleotides

Bulged bases

7NHM|1|A|G|1743

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7NHM_066 not in the Motif Atlas

Geometric match to IL_7RQB_068

Geometric discrepancy: 0.107

The information below is about IL_7RQB_068

Detailed Annotation

tSH-tSH-tHH-tHS

Broad Annotation

No text annotation

Motif group

IL_65969.2

Basepair signature

cWW-tSH-tSH-tHH-tHS-cWW

Number of instances in this motif group

8

Unit IDs

7NHM|1|A|C|1730
7NHM|1|A|G|1731
7NHM|1|A|U|1732
7NHM|1|A|A|1733
7NHM|1|A|A|1734
7NHM|1|A|C|1735
*
7NHM|1|A|G|1740
7NHM|1|A|G|1741
7NHM|1|A|A|1742
7NHM|1|A|G|1743
7NHM|1|A|A|1744
7NHM|1|A|A|1745
7NHM|1|A|G|1746

Current chains

Chain A

23S rRNA

Nearby chains

Chain G

50S ribosomal protein L2

Chain a

Small subunit ribosomal RNA; SSU rRNA