IL_7NHM_068

3D structure

PDB id

7NHM (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome from Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GC*GAU

Length

5 nucleotides

Bulged bases

7NHM|1|A|A|2008

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7NHM_068 not in the Motif Atlas

Homologous match to IL_4WF9_068

Geometric discrepancy: 0.1248

The information below is about IL_4WF9_068

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.6

Basepair signature

cWW-L-cWW

Number of instances in this motif group

130

Unit IDs

7NHM|1|A|G|1797
7NHM|1|A|C|1798
*
7NHM|1|A|G|2007
7NHM|1|A|A|2008
7NHM|1|A|U|2009

Current chains

Chain A

23S rRNA

Nearby chains

Chain G

50S ribosomal protein L2