IL_7NHM_082

3D structure

PDB id

7NHM (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome from Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UAG*CGGG

Length

7 nucleotides

Bulged bases

7NHM|1|A|G|2265

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7NHM_082 not in the Motif Atlas

Homologous match to IL_4WF9_082

Geometric discrepancy: 0.1175

The information below is about IL_4WF9_082

Detailed Annotation

Isolated tHS basepair with bulges

Broad Annotation

No text annotation

Motif group

IL_85599.2

Basepair signature

cWW-tHS-cWW

Number of instances in this motif group

9

Unit IDs

7NHM|1|A|U|2108
7NHM|1|A|A|2109
7NHM|1|A|G|2110
*
7NHM|1|A|C|2263
7NHM|1|A|G|2264
7NHM|1|A|G|2265
7NHM|1|A|G|2266

Current chains

Chain A

23S rRNA

Nearby chains

Chain 1

50S ribosomal protein L28

Chain G

50S ribosomal protein L2