IL_7NHM_130

3D structure

PDB id

7NHM (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome from Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UGAUGAAG*CGUAAAA

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7NHM_130 not in the Motif Atlas

Homologous match to IL_5J7L_020

Geometric discrepancy: 0.2344

The information below is about IL_5J7L_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_28026.3

Basepair signature

cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW

Number of instances in this motif group

2

Unit IDs

7NHM|1|a|U|417
7NHM|1|a|G|418
7NHM|1|a|A|419
7NHM|1|a|U|420
7NHM|1|a|G|421
7NHM|1|a|A|422
7NHM|1|a|A|423
7NHM|1|a|G|424
*
7NHM|1|a|C|435
7NHM|1|a|G|436
7NHM|1|a|U|437
7NHM|1|a|A|438
7NHM|1|a|A|439
7NHM|1|a|A|440
7NHM|1|a|A|441

Current chains

Chain a

16S rRNA

Nearby chains

Chain e

30S ribosomal protein S4