IL_7NHM_131

3D structure

PDB id

7NHM (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome from Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GGAAG*CGGUAC

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7NHM_131 not in the Motif Atlas

Homologous match to IL_4LFB_018

Geometric discrepancy: 0.2001

The information below is about IL_4LFB_018

Detailed Annotation

6x5 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_88269.4

Basepair signature

cWW-tWW-cSH-tWH-tHS-cWW

Number of instances in this motif group

3

Unit IDs

7NHM|1|a|G|454
7NHM|1|a|G|455
7NHM|1|a|A|456
7NHM|1|a|A|457
7NHM|1|a|G|458
*
7NHM|1|a|C|491
7NHM|1|a|G|492
7NHM|1|a|G|493
7NHM|1|a|U|494
7NHM|1|a|A|495
7NHM|1|a|C|496

Current chains

Chain a

16S rRNA

Nearby chains

Chain e

30S ribosomal protein S4

Chain q

30S ribosomal protein S16