IL_7NHM_133
3D structure
- PDB id
- 7NHM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S ribosome from Staphylococcus aureus
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CGGCUAAC*GG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7NHM_133 not in the Motif Atlas
- Homologous match to IL_5J7L_024
- Geometric discrepancy: 0.1468
- The information below is about IL_5J7L_024
- Detailed Annotation
- SSU/LSU pseudoknot
- Broad Annotation
- No text annotation
- Motif group
- IL_41203.4
- Basepair signature
- cWW-L-cWW-L-L-R-cSH
- Number of instances in this motif group
- 11
Unit IDs
7NHM|1|a|C|512
7NHM|1|a|G|513
7NHM|1|a|G|514
7NHM|1|a|C|515
7NHM|1|a|U|516
7NHM|1|a|A|517
7NHM|1|a|A|518
7NHM|1|a|C|519
*
7NHM|1|a|G|548
7NHM|1|a|G|549
Current chains
- Chain a
- 16S rRNA
Nearby chains
- Chain e
- 30S ribosomal protein S4
- Chain m
- 30S ribosomal protein S12
Coloring options: