IL_7NHM_139

3D structure

PDB id

7NHM (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome from Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GU*GUC

Length

5 nucleotides

Bulged bases

7NHM|1|a|U|641

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7NHM_139 not in the Motif Atlas

Geometric match to IL_4C7O_001

Geometric discrepancy: 0.3999

The information below is about IL_4C7O_001

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_89505.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

117

Unit IDs

7NHM|1|a|G|612
7NHM|1|a|U|613
*
7NHM|1|a|G|640
7NHM|1|a|U|641
7NHM|1|a|C|642

Current chains

Chain a

16S rRNA

Nearby chains

Chain i

30S ribosomal protein S8

Chain q

30S ribosomal protein S16

Chain r

30S ribosomal protein S17