IL_7NHM_176

3D structure

PDB id

7NHM (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome from Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GCC*GUC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7NHM_176 not in the Motif Atlas

Geometric match to IL_4LFB_063

Geometric discrepancy: 0.1159

The information below is about IL_4LFB_063

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

7NHM|1|a|G|1446
7NHM|1|a|C|1447
7NHM|1|a|C|1448
*
7NHM|1|a|G|1476
7NHM|1|a|U|1477
7NHM|1|a|C|1478

Current chains

Chain a

16S rRNA

Nearby chains

Chain A

Large subunit ribosomal RNA; LSU rRNA

Chain S

50S ribosomal protein L19

Chain u

30S ribosomal protein S20