IL_7NHM_177

3D structure

PDB id

7NHM (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome from Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UGGA*UAG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7NHM_177 not in the Motif Atlas

Geometric match to IL_8VTW_081

Geometric discrepancy: 0.117

The information below is about IL_8VTW_081

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_38958.10

Basepair signature

cWW-cWW-cWW-tHS

Number of instances in this motif group

9

Unit IDs

7NHM|1|a|U|1451
7NHM|1|a|G|1452
7NHM|1|a|G|1453
7NHM|1|a|A|1454
*
7NHM|1|a|U|1471
7NHM|1|a|A|1472
7NHM|1|a|G|1473

Current chains

Chain a

16S rRNA

Nearby chains

Chain S

50S ribosomal protein L19

Chain u

30S ribosomal protein S20