IL_7NHN_007

3D structure

PDB id

7NHN (explore in PDB, NAKB, or RNA 3D Hub)

Description

VgaL, an antibiotic resistance ABCF, in complex with 70S ribosome from Listeria monocytogenes

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CUGAGUAG*CGAAACG

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7NHN_007 not in the Motif Atlas

Homologous match to IL_4WF9_009

Geometric discrepancy: 0.0965

The information below is about IL_4WF9_009

Detailed Annotation

8x7 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_62167.4

Basepair signature

cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

16

Unit IDs

7NHN|1|A|C|240
7NHN|1|A|U|241
7NHN|1|A|G|242
7NHN|1|A|A|243
7NHN|1|A|G|244
7NHN|1|A|U|245
7NHN|1|A|A|246
7NHN|1|A|G|247
*
7NHN|1|A|C|255
7NHN|1|A|G|256
7NHN|1|A|A|257
7NHN|1|A|A|258
7NHN|1|A|A|259
7NHN|1|A|C|260
7NHN|1|A|G|261

Current chains

Chain A

23S rRNA

Nearby chains

Chain 8

50S ribosomal protein L35

Chain O

50S ribosomal protein L15