IL_7NHN_021

3D structure

PDB id

7NHN (explore in PDB, NAKB, or RNA 3D Hub)

Description

VgaL, an antibiotic resistance ABCF, in complex with 70S ribosome from Listeria monocytogenes

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UGAAG*UGGAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7NHN_021 not in the Motif Atlas

Geometric match to IL_4V9F_027

Geometric discrepancy: 0.0916

The information below is about IL_4V9F_027

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_15190.3

Basepair signature

cWW-tSH-tHS-tHS-cWW

Number of instances in this motif group

26

Unit IDs

7NHN|1|A|U|749
7NHN|1|A|G|750
7NHN|1|A|A|751
7NHN|1|A|A|752
7NHN|1|A|G|753
*
7NHN|1|A|U|770
7NHN|1|A|G|771
7NHN|1|A|G|772
7NHN|1|A|A|773
7NHN|1|A|G|774

Current chains

Chain A

23S rRNA

Nearby chains

Chain G

50S ribosomal protein L2