IL_7NHN_039
3D structure
- PDB id
- 7NHN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- VgaL, an antibiotic resistance ABCF, in complex with 70S ribosome from Listeria monocytogenes
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- GGAAAAG*CGAAAAUGUACCGGGGC
- Length
- 24 nucleotides
- Bulged bases
- 7NHN|1|A|A|1173, 7NHN|1|A|U|1176
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7NHN_039 not in the Motif Atlas
- Geometric match to IL_5J7L_281
- Geometric discrepancy: 0.1077
- The information below is about IL_5J7L_281
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_50715.3
- Basepair signature
- cWW-tSH-tHH-L-R-L-R-L-tWW-L-cWW-L-L-L-R-L
- Number of instances in this motif group
- 4
Unit IDs
7NHN|1|A|G|1070
7NHN|1|A|G|1071
7NHN|1|A|A|1072
7NHN|1|A|A|1073
7NHN|1|A|A|1074
7NHN|1|A|A|1075
7NHN|1|A|G|1076
*
7NHN|1|A|C|1170
7NHN|1|A|G|1171
7NHN|1|A|A|1172
7NHN|1|A|A|1173
7NHN|1|A|A|1174
7NHN|1|A|A|1175
7NHN|1|A|U|1176
7NHN|1|A|G|1177
7NHN|1|A|U|1178
7NHN|1|A|A|1179
7NHN|1|A|C|1180
7NHN|1|A|C|1181
7NHN|1|A|G|1182
7NHN|1|A|G|1183
7NHN|1|A|G|1184
7NHN|1|A|G|1185
7NHN|1|A|C|1186
Current chains
- Chain A
- 23S rRNA
Nearby chains
- Chain 9
- 50S ribosomal protein L36
- Chain B
- 5S ribosomal RNA; 5S rRNA
- Chain H
- 50S ribosomal protein L3
- Chain M
- 50S ribosomal protein L13
- Chain P
- 50S ribosomal protein L16
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