IL_7NHN_048
3D structure
- PDB id
- 7NHN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- VgaL, an antibiotic resistance ABCF, in complex with 70S ribosome from Listeria monocytogenes
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- AUGAGUAG*UGAAAUU
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7NHN_048 not in the Motif Atlas
- Homologous match to IL_4WF9_048
- Geometric discrepancy: 0.0885
- The information below is about IL_4WF9_048
- Detailed Annotation
- 8x7 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_62167.4
- Basepair signature
- cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 16
Unit IDs
7NHN|1|A|A|1307
7NHN|1|A|U|1308
7NHN|1|A|G|1309
7NHN|1|A|A|1310
7NHN|1|A|G|1311
7NHN|1|A|U|1312
7NHN|1|A|A|1313
7NHN|1|A|G|1314
*
7NHN|1|A|U|2044
7NHN|1|A|G|2045
7NHN|1|A|A|2046
7NHN|1|A|A|2047
7NHN|1|A|A|2048
7NHN|1|A|U|2049
7NHN|1|A|U|2050
Current chains
- Chain A
- 23S rRNA
Nearby chains
- Chain 5
- 50S ribosomal protein L32-2
- Chain I
- 50S ribosomal protein L4
- Chain V
- 50S ribosomal protein L22
Coloring options: