IL_7NHN_065

3D structure

PDB id

7NHN (explore in PDB, NAKB, or RNA 3D Hub)

Description

VgaL, an antibiotic resistance ABCF, in complex with 70S ribosome from Listeria monocytogenes

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

ACUCGG*CUGU

Length

10 nucleotides

Bulged bases

7NHN|1|A|G|2025

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7NHN_065 not in the Motif Atlas

Geometric match to IL_5J7L_307

Geometric discrepancy: 0.1151

The information below is about IL_5J7L_307

Detailed Annotation

Intercalated tWH

Broad Annotation

Intercalated tWH

Motif group

IL_76758.2

Basepair signature

cWW-L-R-L-cWW-L-L

Number of instances in this motif group

7

Unit IDs

7NHN|1|A|A|1718
7NHN|1|A|C|1719
7NHN|1|A|U|1720
7NHN|1|A|C|1721
7NHN|1|A|G|1722
7NHN|1|A|G|1723
*
7NHN|1|A|C|2023
7NHN|1|A|U|2024
7NHN|1|A|G|2025
7NHN|1|A|U|2026

Current chains

Chain A

23S rRNA

Nearby chains

Chain H

50S ribosomal protein L3

Chain N

50S ribosomal protein L14