IL_7NHN_067

3D structure

PDB id

7NHN (explore in PDB, NAKB, or RNA 3D Hub)

Description

VgaL, an antibiotic resistance ABCF, in complex with 70S ribosome from Listeria monocytogenes

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UAUUAG*CGAGA

Length

11 nucleotides

Bulged bases

7NHN|1|A|U|1762

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7NHN_067 not in the Motif Atlas

Geometric match to IL_5J7L_022

Geometric discrepancy: 0.369

The information below is about IL_5J7L_022

Detailed Annotation

tSH-tHW-tWW

Broad Annotation

No text annotation

Motif group

IL_88269.4

Basepair signature

cWW-tWW-cSH-tWH-tHS-cWW

Number of instances in this motif group

3

Unit IDs

7NHN|1|A|U|1760
7NHN|1|A|A|1761
7NHN|1|A|U|1762
7NHN|1|A|U|1763
7NHN|1|A|A|1764
7NHN|1|A|G|1765
*
7NHN|1|A|C|1776
7NHN|1|A|G|1777
7NHN|1|A|A|1778
7NHN|1|A|G|1779
7NHN|1|A|A|1780

Current chains

Chain A

23S rRNA

Nearby chains