IL_7NHN_069

3D structure

PDB id

7NHN (explore in PDB, NAKB, or RNA 3D Hub)

Description

VgaL, an antibiotic resistance ABCF, in complex with 70S ribosome from Listeria monocytogenes

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UGCAAAA*UGACGUAUA

Length

16 nucleotides

Bulged bases

7NHN|1|A|A|1834, 7NHN|1|A|C|1849, 7NHN|1|A|U|1853

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7NHN_069 not in the Motif Atlas

Homologous match to IL_7RQB_070

Geometric discrepancy: 0.1086

The information below is about IL_7RQB_070

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_17069.3

Basepair signature

cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

Number of instances in this motif group

5

Unit IDs

7NHN|1|A|U|1831
7NHN|1|A|G|1832
7NHN|1|A|C|1833
7NHN|1|A|A|1834
7NHN|1|A|A|1835
7NHN|1|A|A|1836
7NHN|1|A|A|1837
*
7NHN|1|A|U|1846
7NHN|1|A|G|1847
7NHN|1|A|A|1848
7NHN|1|A|C|1849
7NHN|1|A|G|1850
7NHN|1|A|U|1851
7NHN|1|A|A|1852
7NHN|1|A|U|1853
7NHN|1|A|A|1854

Current chains

Chain A

23S rRNA

Nearby chains

Chain G

50S ribosomal protein L2

Chain a

Small subunit ribosomal RNA; SSU rRNA