IL_7NHN_079

3D structure

PDB id

7NHN (explore in PDB, NAKB, or RNA 3D Hub)

Description

VgaL, an antibiotic resistance ABCF, in complex with 70S ribosome from Listeria monocytogenes

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

ACG*CUAU

Length

7 nucleotides

Bulged bases

7NHN|1|A|C|2088, 7NHN|1|A|U|2646, 7NHN|1|A|A|2647

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7NHN_079 not in the Motif Atlas

Homologous match to IL_5J7L_321

Geometric discrepancy: 0.1021

The information below is about IL_5J7L_321

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_83389.2

Basepair signature

cWW-cWW

Number of instances in this motif group

5

Unit IDs

7NHN|1|A|A|2087
7NHN|1|A|C|2088
7NHN|1|A|G|2089
*
7NHN|1|A|C|2645
7NHN|1|A|U|2646
7NHN|1|A|A|2647
7NHN|1|A|U|2648

Current chains

Chain A

23S rRNA

Nearby chains

Chain 5

50S ribosomal protein L32-2

Chain H

50S ribosomal protein L3

Chain V

50S ribosomal protein L22