IL_7NHN_096

3D structure

PDB id

7NHN (explore in PDB, NAKB, or RNA 3D Hub)

Description

VgaL, an antibiotic resistance ABCF, in complex with 70S ribosome from Listeria monocytogenes

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

AUC*GGUUU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7NHN_096 not in the Motif Atlas

Geometric match to IL_4WF9_092

Geometric discrepancy: 0.1435

The information below is about IL_4WF9_092

Detailed Annotation

Major groove minor groove platform with extra cWW

Broad Annotation

Major groove minor groove platform with extra cWW

Motif group

IL_36931.3

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

26

Unit IDs

7NHN|1|A|A|2492
7NHN|1|A|U|2493
7NHN|1|A|C|2494
*
7NHN|1|A|G|2522
7NHN|1|A|G|2523
7NHN|1|A|U|2524
7NHN|1|A|U|2525
7NHN|1|A|U|2526

Current chains

Chain A

23S rRNA

Nearby chains

Chain 0

Lmo0919 protein

Chain P

50S ribosomal protein L16