IL_7NHN_099

3D structure

PDB id

7NHN (explore in PDB, NAKB, or RNA 3D Hub)

Description

VgaL, an antibiotic resistance ABCF, in complex with 70S ribosome from Listeria monocytogenes

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CUC*GCGAG

Length

8 nucleotides

Bulged bases

7NHN|1|A|G|2609, 7NHN|1|A|A|2610

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7NHN_099 not in the Motif Atlas

Homologous match to IL_4WF9_095

Geometric discrepancy: 0.1172

The information below is about IL_4WF9_095

Detailed Annotation

Isolated non-canonical cWW with bulges

Broad Annotation

Isolated non-canonical cWW with bulges

Motif group

IL_68118.5

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

34

Unit IDs

7NHN|1|A|C|2543
7NHN|1|A|U|2544
7NHN|1|A|C|2545
*
7NHN|1|A|G|2607
7NHN|1|A|C|2608
7NHN|1|A|G|2609
7NHN|1|A|A|2610
7NHN|1|A|G|2611

Current chains

Chain A

23S rRNA

Nearby chains

Chain 0

Lmo0919 protein

Chain 5

50S ribosomal protein L32-2

Chain H

50S ribosomal protein L3