IL_7NHN_100

3D structure

PDB id

7NHN (explore in PDB, NAKB, or RNA 3D Hub)

Description

VgaL, an antibiotic resistance ABCF, in complex with 70S ribosome from Listeria monocytogenes

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CG*CACG

Length

6 nucleotides

Bulged bases

7NHN|1|A|A|2605, 7NHN|1|A|C|2606

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7NHN_100 not in the Motif Atlas

Geometric match to IL_4WF9_096

Geometric discrepancy: 0.129

The information below is about IL_4WF9_096

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_44609.3

Basepair signature

cWW-cWW

Number of instances in this motif group

26

Unit IDs

7NHN|1|A|C|2545
7NHN|1|A|G|2546
*
7NHN|1|A|C|2604
7NHN|1|A|A|2605
7NHN|1|A|C|2606
7NHN|1|A|G|2607

Current chains

Chain A

23S rRNA

Nearby chains

Chain 0

Lmo0919 protein

Chain H

50S ribosomal protein L3

Chain M

50S ribosomal protein L13