IL_7NHN_108
3D structure
- PDB id
- 7NHN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- VgaL, an antibiotic resistance ABCF, in complex with 70S ribosome from Listeria monocytogenes
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- GAUAAA*UGAAGC
- Length
- 12 nucleotides
- Bulged bases
- 7NHN|1|A|A|2798
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7NHN_108 not in the Motif Atlas
- Homologous match to IL_7RQB_107
- Geometric discrepancy: 0.0889
- The information below is about IL_7RQB_107
- Detailed Annotation
- UAA/GAN with extra cWW
- Broad Annotation
- No text annotation
- Motif group
- IL_49767.5
- Basepair signature
- cWW-cWW-tWH-L-tHS-cWW
- Number of instances in this motif group
- 5
Unit IDs
7NHN|1|A|G|2770
7NHN|1|A|A|2771
7NHN|1|A|U|2772
7NHN|1|A|A|2773
7NHN|1|A|A|2774
7NHN|1|A|A|2775
*
7NHN|1|A|U|2795
7NHN|1|A|G|2796
7NHN|1|A|A|2797
7NHN|1|A|A|2798
7NHN|1|A|G|2799
7NHN|1|A|C|2800
Current chains
- Chain A
- 23S rRNA
Nearby chains
- Chain 9
- 50S ribosomal protein L36
- Chain K
- 50S ribosomal protein L6
- Chain M
- 50S ribosomal protein L13
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