IL_7NHN_111

3D structure

PDB id

7NHN (explore in PDB, NAKB, or RNA 3D Hub)

Description

VgaL, an antibiotic resistance ABCF, in complex with 70S ribosome from Listeria monocytogenes

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UGGAAG*UGGAG

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7NHN_111 not in the Motif Atlas

Homologous match to IL_4WF9_108

Geometric discrepancy: 0.0971

The information below is about IL_4WF9_108

Detailed Annotation

tHS double platform

Broad Annotation

No text annotation

Motif group

IL_48489.2

Basepair signature

cWW-tSH-L-tHH-L-cWW

Number of instances in this motif group

9

Unit IDs

7NHN|1|A|U|2876
7NHN|1|A|G|2877
7NHN|1|A|G|2878
7NHN|1|A|A|2879
7NHN|1|A|A|2880
7NHN|1|A|G|2881
*
7NHN|1|A|U|2894
7NHN|1|A|G|2895
7NHN|1|A|G|2896
7NHN|1|A|A|2897
7NHN|1|A|G|2898

Current chains

Chain A

23S rRNA

Nearby chains

Chain Q

50S ribosomal protein L17

Chain S

50S ribosomal protein L19