IL_7NHN_143

3D structure

PDB id

7NHN (explore in PDB, NAKB, or RNA 3D Hub)

Description

VgaL, an antibiotic resistance ABCF, in complex with 70S ribosome from Listeria monocytogenes

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GU*GUC

Length

5 nucleotides

Bulged bases

7NHN|1|a|U|643

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7NHN_143 not in the Motif Atlas

Geometric match to IL_7RQB_080

Geometric discrepancy: 0.2812

The information below is about IL_7RQB_080

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_83039.16

Basepair signature

cWW-L-cWW

Number of instances in this motif group

116

Unit IDs

7NHN|1|a|G|614
7NHN|1|a|U|615
*
7NHN|1|a|G|642
7NHN|1|a|U|643
7NHN|1|a|C|644

Current chains

Chain a

16S rRNA

Nearby chains

Chain i

30S ribosomal protein S8

Chain r

30S ribosomal protein S17