IL_7NHN_146

3D structure

PDB id

7NHN (explore in PDB, NAKB, or RNA 3D Hub)

Description

VgaL, an antibiotic resistance ABCF, in complex with 70S ribosome from Listeria monocytogenes

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UGC*GUAA

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7NHN_146 not in the Motif Atlas

Geometric match to IL_3V7E_003

Geometric discrepancy: 0.3303

The information below is about IL_3V7E_003

Detailed Annotation

Major groove platform with extra pair

Broad Annotation

Major groove platform

Motif group

IL_15698.3

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

10

Unit IDs

7NHN|1|a|U|667
7NHN|1|a|G|668
7NHN|1|a|C|669
*
7NHN|1|a|G|756
7NHN|1|a|U|757
7NHN|1|a|A|758
7NHN|1|a|A|759

Current chains

Chain a

16S rRNA

Nearby chains

Chain p

30S ribosomal protein S15