IL_7NHN_169

3D structure

PDB id

7NHN (explore in PDB, NAKB, or RNA 3D Hub)

Description

VgaL, an antibiotic resistance ABCF, in complex with 70S ribosome from Listeria monocytogenes

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CGAAG*UGGAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7NHN_169 not in the Motif Atlas

Homologous match to IL_5J7L_056

Geometric discrepancy: 0.289

The information below is about IL_5J7L_056

Detailed Annotation

Double sheared with non-canonical cWW

Broad Annotation

Double sheared

Motif group

IL_17948.2

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

13

Unit IDs

7NHN|1|a|C|1268
7NHN|1|a|G|1269
7NHN|1|a|A|1270
7NHN|1|a|A|1271
7NHN|1|a|G|1272
*
7NHN|1|a|U|1281
7NHN|1|a|G|1282
7NHN|1|a|G|1283
7NHN|1|a|A|1284
7NHN|1|a|G|1285

Current chains

Chain a

16S rRNA

Nearby chains