IL_7NQH_008

3D structure

PDB id

7NQH (explore in PDB, NAKB, or RNA 3D Hub)

Description

55S mammalian mitochondrial ribosome with mtRF1a and P-site tRNAMet

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GCAC*GC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7NQH_008 not in the Motif Atlas

Geometric match to IL_4LFB_028

Geometric discrepancy: 0.2402

The information below is about IL_4LFB_028

Detailed Annotation

Major groove platform

Broad Annotation

No text annotation

Motif group

IL_48076.8

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

43

Unit IDs

7NQH|1|AA|G|116
7NQH|1|AA|C|117
7NQH|1|AA|A|118
7NQH|1|AA|C|119
*
7NQH|1|AA|G|133
7NQH|1|AA|C|134

Current chains

Chain AA

12S rRNA

Nearby chains

Chain AO

uS15m

Chain AQ

uS17m

Chain An

Aurora kinase A interacting protein 1