IL_7NQH_056

3D structure

PDB id

7NQH (explore in PDB, NAKB, or RNA 3D Hub)

Description

55S mammalian mitochondrial ribosome with mtRF1a and P-site tRNAMet

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GAC*GCC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7NQH_056 not in the Motif Atlas

Geometric match to IL_5TBW_079

Geometric discrepancy: 0.1312

The information below is about IL_5TBW_079

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

7NQH|1|BA|G|249
7NQH|1|BA|A|250
7NQH|1|BA|C|251
*
7NQH|1|BA|G|341
7NQH|1|BA|C|342
7NQH|1|BA|C|343

Current chains

Chain BA

16S rRNA

Nearby chains

Chain B7

Mitochondrial ribosomal protein L34

Chain BF

Mitochondrial ribosomal protein L4