IL_7NQH_059

3D structure

PDB id

7NQH (explore in PDB, NAKB, or RNA 3D Hub)

Description

55S mammalian mitochondrial ribosome with mtRF1a and P-site tRNAMet

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CAUC*GUG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7NQH_059 not in the Motif Atlas

Homologous match to IL_7A0S_019

Geometric discrepancy: 0.1581

The information below is about IL_7A0S_019

Detailed Annotation

Major groove platform with extra cWW

Broad Annotation

Major groove platform

Motif group

IL_36931.2

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

24

Unit IDs

7NQH|1|BA|C|285
7NQH|1|BA|A|286
7NQH|1|BA|U|287
7NQH|1|BA|C|288
*
7NQH|1|BA|G|303
7NQH|1|BA|U|304
7NQH|1|BA|G|305

Current chains

Chain BA

16S rRNA

Nearby chains

Chain B7

Mitochondrial ribosomal protein L34