3D structure

PDB id
7NQL (explore in PDB, NAKB, or RNA 3D Hub)
Description
55S mammalian mitochondrial ribosome with ICT1 and P site tRNAMet
Experimental method
ELECTRON MICROSCOPY
Resolution
3.4 Å

Loop

Sequence
CU*ACG
Length
5 nucleotides
Bulged bases
7NQL|1|BA|C|104
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7NQL_048 not in the Motif Atlas
Homologous match to IL_5J7L_246
Geometric discrepancy: 0.1988
The information below is about IL_5J7L_246
Detailed Annotation
Single bulged A
Broad Annotation
No text annotation
Motif group
IL_31462.7
Basepair signature
cWW-L-cWW
Number of instances in this motif group
132

Unit IDs

7NQL|1|BA|C|12
7NQL|1|BA|U|13
*
7NQL|1|BA|A|103
7NQL|1|BA|C|104
7NQL|1|BA|G|105

Current chains

Chain BA
16S rRNA

Nearby chains

Chain B1
Mitochondrial ribosomal protein L28
Chain B2
Mitochondrial ribosomal protein L47
Chain BF
Mitochondrial ribosomal protein L4
Chain BU
Mitochondrial ribosomal protein L20
Chain Bh
mL44
Chain Bn
Mitochondrial ribosomal protein L51

Coloring options:


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