IL_7NQL_096

3D structure

PDB id

7NQL (explore in PDB, NAKB, or RNA 3D Hub)

Description

55S mammalian mitochondrial ribosome with ICT1 and P site tRNAMet

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

AUC*GUGAU

Length

8 nucleotides

Bulged bases

7NQL|1|BA|G|1399, 7NQL|1|BA|A|1400

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7NQL_096 not in the Motif Atlas

Homologous match to IL_4WF9_095

Geometric discrepancy: 0.1586

The information below is about IL_4WF9_095

Detailed Annotation

Isolated non-canonical cWW with bulges

Broad Annotation

Isolated non-canonical cWW with bulges

Motif group

IL_68118.5

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

34

Unit IDs

7NQL|1|BA|A|1333
7NQL|1|BA|U|1334
7NQL|1|BA|C|1335
*
7NQL|1|BA|G|1397
7NQL|1|BA|U|1398
7NQL|1|BA|G|1399
7NQL|1|BA|A|1400
7NQL|1|BA|U|1401

Current chains

Chain BA

16S rRNA

Nearby chains

Chain B5

bL32m

Chain BE

ICT1

Chain BL

Peptidyl-tRNA hydrolase ICT1, mitochondrial