IL_7NRC_007

3D structure

PDB id

7NRC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast Gcn1 bound to a leading stalled 80S ribosome with Rbg2, Gir2, A- and P-tRNA and eIF5A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

AU*AGUUGU

Length

8 nucleotides

Bulged bases

7NRC|1|LA|U|147

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7NRC_007 not in the Motif Atlas

Homologous match to IL_5TBW_007

Geometric discrepancy: 0.1377

The information below is about IL_5TBW_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_19724.3

Basepair signature

cWW-cWW-L-cWW-L

Number of instances in this motif group

4

Unit IDs

7NRC|1|LA|A|123
7NRC|1|LA|U|124
*
7NRC|1|LA|A|144
7NRC|1|LA|G|145
7NRC|1|LA|U|146
7NRC|1|LA|U|147
7NRC|1|LA|G|148
7NRC|1|LA|U|149

Current chains

Chain LA

25S rRNA (3184-MER)

Nearby chains

Chain LC

5.8S ribosomal RNA; 5.8S rRNA

Chain LJ

60S ribosomal protein L8-A

Chain LP

60S ribosomal protein L15-A

Chain Lj

60S ribosomal protein L35-A