IL_7NRC_014

3D structure

PDB id

7NRC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast Gcn1 bound to a leading stalled 80S ribosome with Rbg2, Gir2, A- and P-tRNA and eIF5A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GAC*GU

Length

5 nucleotides

Bulged bases

7NRC|1|LA|A|338

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7NRC_014 not in the Motif Atlas

Homologous match to IL_5TBW_013

Geometric discrepancy: 0.1307

The information below is about IL_5TBW_013

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

127

Unit IDs

7NRC|1|LA|G|337
7NRC|1|LA|A|338
7NRC|1|LA|C|339
*
7NRC|1|LC|G|25
7NRC|1|LC|U|26

Current chains

Chain LA

25S rRNA (3184-MER)

Chain LC

5.8S rRNA (158-MER)

Nearby chains

Chain LF

60S ribosomal protein L4-A

Chain La

60S ribosomal protein L26-A