IL_7NRC_018

3D structure

PDB id

7NRC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast Gcn1 bound to a leading stalled 80S ribosome with Rbg2, Gir2, A- and P-tRNA and eIF5A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CAGACAUGGUGUUUUGUAUUUCACUGG*CAUAAUG

Length

34 nucleotides

Bulged bases

7NRC|1|LA|A|440

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

7NRC|1|LA|C|435
7NRC|1|LA|A|436
7NRC|1|LA|G|437
7NRC|1|LA|A|438
7NRC|1|LA|C|439
7NRC|1|LA|A|440
7NRC|1|LA|U|441
7NRC|1|LA|G|442
7NRC|1|LA|G|443
7NRC|1|LA|U|444
7NRC|1|LA|G|445
7NRC|1|LA|U|446
7NRC|1|LA|U|447
7NRC|1|LA|U|448
7NRC|1|LA|U|449
7NRC|1|LA|G|450
7NRC|1|LA|U|451
7NRC|1|LA|A|486
7NRC|1|LA|U|487
7NRC|1|LA|U|488
7NRC|1|LA|U|489
7NRC|1|LA|C|490
7NRC|1|LA|A|491
7NRC|1|LA|C|492
7NRC|1|LA|U|493
7NRC|1|LA|G|494
7NRC|1|LA|G|495
*
7NRC|1|LA|C|618
7NRC|1|LA|A|619
7NRC|1|LA|U|620
7NRC|1|LA|A|621
7NRC|1|LA|A|622
7NRC|1|LA|U|623
7NRC|1|LA|G|624

Current chains

Chain LA

25S rRNA (3184-MER)

Nearby chains

Chain LH

60S ribosomal protein L6-B

Chain LR

60S ribosomal protein L17-A

Chain Lg

60S ribosomal protein L32

Chain Lh

60S ribosomal protein L33-A